In Press

Stierle, A., and Stierle, D. (2016) Secondary Metabolites of Acid Mine Waste Fungi, In Topics in Biodiversity and Conservation (Hawksworth, D., Ed.), Springer. ISSN:1875-1288, in press.

Stierle, A., Stierle, D.B., Decato, D., Mou, T.C. (2015) The Berkeleylactones, New Antibiotic Macrolides from a Berkeley Pit Fungal Co-Culture, J Org Chem, in press.


alphabetical by publication year 20162015 | 2014 | 2013 | 2012 | 2011


Hansen, Kasper B.; Feng, Yi; Mou, Tung-Chung; Sprang, Stephen R. 2016. “Structural Basis for Negative Allosteric Modulation of GluN2A-Containing NMDA Receptors.” DOI: 10.1016/j.neuron.2016.08.014. 

Beamer GL, Seaver BP, Jessop F, Shepherd DM, Beamer CA. Acute Exposure to Crystalline Silica Reduces Macrophage Activation in Response to Bacterial Lipoproteins. Front Immunol. (2016) Feb 15;7:49. doi: 10.3389/fimmu.2016.00049. eCollection 2016. PubMed PMID: 26913035; PubMed Central PMCID: PMC4753301.

Kreitinger JM, Beamer CA, Shepherd DM. Environmental Immunology: Lessons Learned from Exposure to a Select Panel of Immunotoxicants. J Immunol. 2016 Apr 15;196(8):3217-25. doi: 10.4049/jimmunol.1502149. Review. PubMed PMID: 27044635; PubMed Central PMCID: PMC4824550.

Kristensen, A. S., Hansen, K. B., Naur, P., Olsen, L., Kurtkaya, N. L., Dravid, S. M., Kvist, T., Yi, F., Pohlsgaard, J., Clausen, R. P., Gajhede, M., Kastrup, J. S., and Traynelis, S. F. (2016) Pharmacology and Structural Analysis of Ligand Binding to the Orthosteric Site of Glutamate-Like GluD2 Receptors, Molecular pharmacology 89, 253-262. PMID: 26661043.

Morales CT, Muzquiz LI, Howlett K, Azure B, Bodnar B, Finley V, Incashola T, Mathias C, Laukes C, Beatty P, Burke W, Pershouse MA, Putnam EA, Trinidad SB, James R, Woodahl EL. Partnership with the Confederated Salish and Kootenai Tribes: Establishing an Advisory Committee for Pharmacogenetic Research. Prog Community Health Partnersh. 2016 Summer;10(2):173-83. doi: 10.1353/cpr.2016.0035. PubMed PMID: 27346763.

Rosenberg, Edward, Geoffrey Abbott, J. B. Ross, Riley McVay, and Michelle Terwilliger. "Luminescence Quenching and Enhancement by Adsorbed Metal Ions with Ruthenium Diimine Complexes Immobilized on Silica Polyamine Composites." In Macromolecular Symposia, vol. 364, no. 1, pp. 47-55. 2016.

Voronina, Ekaterina, and David Greenstein (2016) "Germ Cell Fate Determination in C. elegans." eLS Citable reviews in the Life Sciences.


Abbott, G., Brooks, R., and Rosenberg, E. (2015) Investigations on the surface structure and properties of silica‐polyamine composites on the nanoscales and microscales, Journal of Applied Polymer Science 132. (DOI: 10.1002/app.42271)

Bandi, S., and Bolwer, B. (2015) Effect of an Ala81His mutation on the Met80 loop dynamics of iso-1-cytochrome c, Biochemistry 54(9):1729-1742 (PMID: 25671560)

Campos, C. H., Rosenberg, E., Fierro, J. L., Urbano, B. F., Rivas, B. L., Torres, C. C., and Reyes, P. (2015) Hydrogenation of nitro-compounds over rhodium catalysts supported on poly [acrylic acid]/Al 2 O 3 composites, Applied Catalysis A: General 489, 280-291. (DOI: 10.1016/j.apcata.2014.10.029)

Decato, D. A. and O. B. Berryman (2015). "Crystal structure of [1,1':3',1''-terphenyl]-2',3,3''-tricarboxylic acid." Acta Crystallographica Section E 71(9): o667-o668 (DOI:10.1107/S2056989015015029)

Dorfman, E. H., Brown Trinidad, S., Morales, C. T., Howlett, K., Burke, W., and Woodahl, E. L. (2015) Pharmacogenomics in diverse practice settings: implementation beyond major metropolitan areas, Pharmacogenomics 16, 227-237. (PMID: 25712186)

Ellenbecker, M., St Goddard, J., Sundet, A., Lanchy, J. M., Raiford, D., and Lodmell, J. S. (2015) Computational prediction and biochemical characterization of novel RNA aptamers to Rift Valley fever virus nucleocapsid protein, Comput Biol Chem 58, 120-125. (PMID: 26141677)

Gao, H., and Shreeve, J. M. (2015) The Many Faces of FOX-7: A Precursor to High-Performance Energetic Materials, Angew Chem Int Ed Engl 54, 6335-6338. (PMID: 25827119)

Goldes, M. E., Jeakins-Cooley, M. E., McClelland, L. J., Mou, T. C., and Bowler, B. E. (2015) Disruption of a hydrogen bond network in human versus spider monkey cytochrome c affects heme crevice stability, Journal of inorganic biochemistry. (PMID: 26775610)

Hahn, David; Tusell, Jose; Sprang, Stephen; Chu, Xi (2015) Catalytic mechanism of mammalian adenylyl cyclase: a computational investigation, Biochemistry 54(40), 6252-6262. (PMID: 26393535)

Kolawole, A. O., Hixon, B. P., Dameron, L. S., Chrisman, I. M., and Smirnov, V. V. (2015) Catalytic activity of human indoleamine 2,3-dioxygenase (hIDO1) at low oxygen, Arch Biophys 570, 47-57. (PMID: 25712221)

Lacher, S.E., Skagen, K., Veit, J., Dalton, R., Woodahl, E.L. (2015) P-glycoprotein Transport of Neurotoxic Pesticides, J Pharmacol Exp Ther, 355:99-107, 2015. (PMID: 26272936)

Massena, C. J., Riel, A. M., Neuhaus, G. F., Decato, D. A., and Berryman, O. B. (2015) Solution and solid-phase halogen and C-H hydrogen bonding to perrhenate, Chem Commun (Camb) 51, 1417-1420. (PMID: 25503678)

McClelland, L.J., Seagraves, S.M., Khan, M.K., Cherney, M.M., Bandi, S., Culbertson, J.E., Bowler, B.E. (2015) The response of Ω-loop D dynamics to truncation of trimethyllysine 72 of yeast iso-1-cytochrome c depends on the nature of loop deformation, JBIC Journal of Biological Inorganic Chemistry 20 (5), 805-819. (PMID: 25948392)

Novak, P., Wang, X., Ellenbecker, M., Feilzer, S., and Voronina, E. (2015) Splicing Machinery Facilitates Post-transcriptional Regulation by FBFs and other RNA-Binding Proteins in C. elegans Germline. G3. (PMID: 26268245)

Riel, A.M. S., Decato, D., and Berryman, O. B. (2015) Protonation and Alkylation Induced Multidentate C-H...Anion Binding to Perrhenate, Crystal Growth & Design, Articles ASAP Publication date (Web): December 22, 2015 DOI: 10.1021/acs.cgd.5b01524.

Schultz, E. P., Lanchy, J. M., Ellerbeck, E. E., and Ryckman, B. J. (2015) Scanning mutagenesis of human cytomegalovirus gH/gL, Journal of virology. Pii: JVI.01875-15. [Epub ahead of print]. (PMID: 26656708)

Stierle, A. A., and Stierle, D. B. (2015) Bioactive Secondary Metabolites Produced by the Fungal Endophytes of Conifers, Natural product communications 10, 1671-1682. (PMID: 26669101)

Stierle, A., Stierle, D., and Decato, D. (2015) Redetermination and absolute configuration of berkeleydione, Acta Crystallographica Section E: Crystallographic Communications 71, o248-o248.(PMID: 26029438)

Stierle, A., Stierle, D., and Decato, D. (2015) Crystal Structure and absolute configuration of preaustinoid A1, Acta crystallographica. Section E, Crystallographic Communications 71, o596-o597. (PMCID: PMC4571416)

Stierle, A. A., Stierle, D. B., Girtsman, T., Mou, T. C., Antczak, C., and Djaballah, H. (2015) Azaphilones from an Acid Mine Extremophile Strain of a Pleurostomophora sp, Journal of natural products 78, 2917-2923. (PMID: 26641525)

Stine, J. M., Sun, Y., Armstrong, G., Bowler, B. E., and Briknarova, K. (2015) Structure and Unfolding of the Third Type III Domain from Human Fibronectin, Biochemistry 54, 6724-6733. (PMID: 26517579)

Sun, Y., Stine, J. M., Atwater, D. Z., Sharmin, A., Ross, J. B., and Briknarova, K. (2015) Structural and functional characterization of the acidic region from the RIZ tumor suppressor, Biochemistry 54, 1390-1400. (PMID: 25640033)

Trahey, M., Li, M.J., Kwon, H., Woodahl, E.L., McClary, W.D., Atkins, W.M. (2015) Applications of Lipid Nanodiscs for the Study of Membrane Proteins by Surface Plasmon Resonance, J Curr Protoc Protein Sci., 81:29.13.1-29.13.16. (PMID: 26237675)

Van Eps, N., Thomas, C. J., Hubbell, W. L., and Sprang, S. R. (2015) The guanine nucleotide exchange factor Ric-8A induces domain separation and Ras domain plasticity in Galphai1, Proc Natl Acad Sci U S A 112, 1404-1409. (PMID: 25605908)

Wageling, N. B., Neuhaus, G. F., Rose, A. M., Decato, D. A., & Berryman, O. B. (2015). Advantages of organic halogen bonding for halide recognition.Supramolecular Chemistry, 1-8. (DOI:10.1080/10610278.2015.1118101)

Wei, H., Zhang, J., He, C., and Shreeve, J. M. (2015) Energetic salts based on furazan-functionalized tetrazoles: routes to boost energy, Chemistry 21, 8607-8612. (PMID: 25925025)

Yin, P., Zhang, J., Parrish, D. A., and Jean'ne, M. S. (2015) Energetic fused triazoles–a promising C–N fused heterocyclic cation, Journal of Materials Chemistry A 3, 8606-8612. (PMID: 25807076)

Zhang, J., Parrish, D. A., and Shreeve, J. M. (2015) Curious cases of 3,6-dinitropyrazolo[4,3-c]pyrazole-based energetic cocrystals with high nitrogen content: an alternative to salt formation, Chem Commun (Camb) 51, 7337-7340. (PMID: 25820478)

Zhou, M., Lanchy, J. M., and Ryckman, B. J. (2015) Human cytomegalovirus gH/gL/gO promotes the fusion step of entry into all cell types whereas gH/gL/UL128-131 broadens virus tropism through a distinct mechanism, J Virol. (PMID: 26085146)


Abbott, G., Brooks, R., Rosenberg, E., Terwilliger, M., Ross, J. B., and Ichire, O. O. (2014) Surface-Bound Ruthenium Diimine Organometallic Complexes: Excited-State Properties, Organometallics 33, 2467-2478. (PMID: 24891753)

Khatri, A., Burger, P. B., Swanger, S. A., Hansen, K. B., Zimmerman, S., Karakas, E., Liotta, D. C., Furukawa, H., Snyder, J. P., and Traynelis, S. F. (2014) Structural determinants and mechanism of action of a GluN2C-selective NMDA receptor positive allosteric modulator, Mol Pharmacol 86, 548-560. (PMID: 25205677)

Lacher, S. E., Gremaud, J. N., Skagen, K., Steed, E., Dalton, R., Sugden, K. D., Cardozo-Pelaez, F., Sherwin, C. M., and Woodahl, E. L. (2014) Absence of P-glycoprotein transport in the pharmacokinetics and toxicity of the herbicide paraquat, J Pharmacol Exp Ther 348, 336-345. (PMID: 24297779)

McClelland, L. J., Mou, T. C., Jeakins-Cooley, M. E., Sprang, S. R., and Bowler, B. E. (2014) Structure of a mitochondrial cytochrome c conformer competent for peroxidase activity, Proc Natl Acad Sci U S A 111, 6648-6653. (PMID: 24760830)

Rosenberg, E., and Kumar, R. (2014) Hydride Dynamics in Triosmium and Triruthenium Carbonyl Clusters: Synthesis, Reactivity and Dynamics of a Trihydrido Quinoline-4-Carboxaldehyde Triosmium Cluster, Journal of Cluster Science 25, 239-252. (DOI 10.1007/s10876-013-0635-7)

Stierle, A. A., and Stierle, D. B. (2014) Bioactive secondary metabolites from acid mine waste extremophiles, Natural product communications 9, 1037-1044. (PMID: 25230522)

Stierle, A. A., Stierle, D. B., Mitman, G. G., Snyder, S., Antczak, C., and Djaballah, H. (2014) Phomopsolides and related compounds from the alga-associated fungus, Penicillium clavigerum, Nat Prod Commun 9, 87-90. (PMID: 24660471)

Sun W., Shchepakin D., Kalachev L.V., Kavanaugh M.P. (2014) Glutamate transporter control of ambient glutamate levels. Neurochem Int 73, 146. (PMID: 24768447) 


Calderon-Garciduenas, L., Serrano-Sierra, A., Torres-Jardon, R., Zhu, H., Yuan, Y., Smith, D., Delgado-Chavez, R., Cross, J. V., Medina-Cortina, H., Kavanaugh, M., and Guilarte, T. R. (2013) The impact of environmental metals in young urbanites' brains, Exp Toxicol Pathol 65, 503-511. (PMID: 22436577)

Matti, A. A., Mirzaei, J., Rudolph, J., Smith, S. A., Newell, J. L., Patel, S. A., Braden, M. R., Bridges, R. J., and Natale, N. R. (2013) Microwave accelerated synthesis of isoxazole hydrazide inhibitors of the system xc- transporter: Initial homology model, Bioorg Med Chem Lett 23, 5931-5935. (PMCID: PMC3876936)

Sharmin, A., Salassa, L., Rosenberg, E., Ross, J. B., Abbott, G., Black, L., Terwilliger, M., and Brooks, R. (2013) Photophysical studies of bioconjugated ruthenium metal-ligand complexes incorporated in phospholipid membrane bilayers, Inorg Chem 52, 10835-10845. (PMID: 24063694)

Stierle, A., and Stierle, D. (2013) Bioprospecting in the Berkeley Pit: the use of signal transduction enzyme inhibition assays to isolate bioactive secondary metabolites from the extremophilic fungi of an acid mine Waste Lake, Stud Nat Prod Chem 39, Book Chapter, 1-45. (ISBN 978-81-322-2056-5, eBook)

Wang, H., Rascoe, A. M., Holley, D. C., Gouaux, E., and Kavanaugh, M. P. (2013) Novel dicarboxylate selectivity in an insect glutamate transporter homolog, PloS one 8. (PMID: 23951049)


Bowler, B. E. (2012) Residual structure in unfolded proteins, Curr Opin Struct Biol 22, 4-13. (PMID: 21978577)

Bridges, R. J., Natale, N. R., and Patel, S. A. (2012) System xc(-) cystine/glutamate antiporter: an update on molecular pharmacology and roles within the CNS, Br J Pharmacol 165, 20-34. (PMID: 21564084)

Ellenbecker, M., Lanchy, J. M., and Lodmell, J. S. (2012) Identification of Rift Valley fever virus nucleocapsid protein-RNA binding inhibitors using a high-throughput screening assay, J Biomol Screen 17, 1062-1070. (PMCID: PMC3520603)

Khan, M. K., Miller, A. L., and Bowler, B. E. (2012) Tryptophan stabilizes His-heme loops in the denatured state only when it is near a loop end, Biochemistry 51, 3586-3595. (PMID: 22486179)

Qi, X., Moore, R. A., and McGuirl, M. A. (2012) Dissociation of recombinant prion protein fibrils into short protofilaments: implications for the endocytic pathway and involvement of the N-terminal domain, Biochemistry 51, 4600-4608. (PMID:22591453)

Seifert, R., Lushington, G. H., Mou, T. C., Gille, A., and Sprang, S. R. (2012) Inhibitors of membranous adenylyl cyclases, Trends Pharmacol Sci 33, 64-78. (PMID: 22100304)

Stierle, A. A., Stierle, D. B., and Girtsman, T. (2012) Caspase-1 inhibitors from an extremophilic fungus that target specific leukemia cell lines, J Nat Prod 75, 344-350. (PMID: 22295871)

Stierle, D. B., Stierle, A. A., Girtsman, T., McIntyre, K., and Nichols, J. (2012) Caspase-1 and -3 inhibiting drimane sesquiterpenoids from the extremophilic fungus Penicillium solitum, J Nat Prod 75, 262-266. (PMID: 22276851)

Tanner, D. R., Hedrick, E. G., and Hill, W. E. (2012) Real-time evidence for EF-G-induced dynamics of helix 44 in 16S rRNA, J Mol Biol 422, 45-57. (PMID: 22634282)

Thomas, C. J., Shankar, S., Casquilho-Gray, H. E., York, J., Sprang, S. R., and Nunberg, J. H. (2012) Biochemical reconstitution of hemorrhagic-fever arenavirus envelope glycoprotein-mediated membrane fusion, PLoS One 7, e51114. (PMID: 23226473)


Battisti, J. M., Hicks, L. D., and Minnick, M. F. (2011) A unique Coxiella burnetii lipoprotein involved in metal binding (LimB), Microbiology 157, 966-976. (PMID: 21212117)

Stierle, D. B., Stierle, A. A., Patacini, B., McIntyre, K., Girtsman, T., and Bolstad, E. (2011) Berkeleyones and related meroterpenes from a deep water acid mine waste fungus that inhibit the production of interleukin 1-beta from induced inflammasomes, J Nat Prod 74, 2273-2277. (PMID: 21916432)

Sun, W., Hoffman, K. M., Holley, D. C., and Kavanaugh, M. P. (2011) Specificity and actions of an arylaspartate inhibitor of glutamate transport at the Schaffer collateral-CA1 pyramidal cell synapse, PLoS One 6, e23765. (PMID: 21887314)

Wright, B. E., Schmidt, K. H., Hunt, A. T., Lodmell, J. S., Minnick, M. F., and Reschke, D. K. (2011) The roles of transcription and genotoxins underlying p53 mutagenesis in vivo, Carcinogenesis 32, 1559-1567. (PMID: 21803733)

Wright, B. E., Schmidt, K. H., Hunt, A. T., Reschke, D. K., and Minnick, M. F. (2011) Evolution of coordinated mutagenesis and somatic hypermutation in VH5, Mol Immunol 49, 537-548. (PMID: 22056943)