Assistant Professor of Computer Science
Data Structures & Algorithms (CSCI 232)
Analysis of Algorithms (CSCI 332)
Computational Biology / Bioinformatics (CSCI 451 / 558)
Parallel Computing (CSCI 489 / 580)
My group develops methods in computational biology, with an emphasis on sequence analysis:
- development of algorithms, primarily in the area of genomic, e.g. that increase the speed and power of sequence database search using profile hidden Markov models (in HMMER)
- application of these methods to biology-motivated topics, especially those involving transposable elements and regulatory elements.
Visit my lab page (http://wheelerlab.org) to read more about my research and group.
The lab has open positions for motivated postdocs and students at all levels (PhD, Masters, Undergrad). Please drop me a line if you'd like to discuss possibilities.
A list of my publications can be found at Google Scholar
LBNL / Joint Genome Institute (Affiliate)
Cellular, Molecular, and Microbial Biology (Associated Faculty)